Installation

Ocelli was developed and tested on Python 3.8 and 3.9.

The source code is available on GitHub. Ocelli is actively maintained and in continuous development. If you encounter any installation issues or bugs, please report them by opening an issue.

Installation Steps

To install ocelli, follow these steps:

0. Install Java and Conda (if not already installed)

   Java is required for force-directed layout graph visualization. You can download it from here.

   Alternatively, on Linux, install Java using:

   sudo apt update
   sudo apt install default-jdk
   

   Download and install Miniconda from here.

1. Create and activate a conda environment

   Open a terminal and create a new environment named ocelli, we recommend using Python 3.9:

   conda create -n ocelli python=3.9
   conda activate ocelli
   

2. Download and install Ocelli

   git clone https://github.com/TabakaLab/ocelli.git
   pip install ocelli/.